AutoPaleo: to egg or not to egg

I've never had issues with eggs, so why are they making me feel worse now? Here is a great article about eggs for those with autoimmune issues:

The WHYs behind the Autoimmune Protocol: Eggs
By ThePaleoMom.com
http://www.thepaleomom.com/2012/06/whys-behind-autoimmune-protocol-eggs.html

The The Autoimmune Protocol
http://www.thepaleomom.com/autoimmunity/the-autoimmune-protocol